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Reduce your AI Agent’s context rot with Search APIs and RAG

>_ Alexander Ng

Bing Search API backgriound cover

Context rot is the accuracy drop large language models exhibit as input context grows. Long prompts add positional bias and distractors, so key details are overlooked or diluted. Mitigate it by using retrieval‑augmented generation (RAG) and search APIs: fetch only relevant, up‑to‑date snippets, ground answers with citations, keeping prompts short and focused.

TL;DR / Key Takeaways

  • Long contexts lower accuracy due to positional bias and distractors.
  • Performance can drop from ~95% → ~60–70% on long inputs with irrelevant content.
  • Replace long prompts with RAG and search APIs: retrieve only task-relevant, fresh snippets.
  • Valyu DeepSearch API returns passages/tables → smaller prompts and fewer errors. (See mitigation matrix below)

Assumptions of long context LLMs

In theory, a large language model (LLM) with 100 pages of context should be just as reliable as with one with 1 page of context. However in practice this "long-context" assumption breaks down. Recent research has shown that even state-of-the-art models degrade significantly on longer inputs, exhibiting bizarre errors or omissions that wouldn’t occur with a shorter prompt. This is especially problematic in knowledge-intensive fields (finance, medicine, research), where agents need to ingest large amounts of information to perform complex tasks. This is known as context rot.

What is Context Rot?

Context rot is the systematic degradation of model accuracy and reliability as the input context length increases. Instead of processing all parts of a long prompt uniformly, LLMs tend to perform worse the more information they have to juggle. For example, a recent evaluation of 18 leading models (including GPT-4.1 and Claude 4) by Chroma Research found their performance on simple tasks starts near perfect with short inputs but then drops off as the input grows into thousands of tokens. In one benchmark, models that scored over 95% on short prompts fell to around 60–70% on longer contexts containing semantically relevant content and distractors. In essence, every extra page of context reduces accuracy, beyond a certain point, more information undermines the model’s reliability [1].

Symptoms of context rot can include omissions, confusion, or even gibberish in model outputs as context grows. Researchers observed GPT-4.1 variants begin inserting erroneous duplicates of words (e.g. answering with "Golden Golden / Gate Gate" when given "Golden Gate Bridge" in a long list), an error that never occurred with a short prompt. Other models show a form of "topic drift" or hallucination: e.g. Gemini would sometimes produce completely unrelated paragraphs drawn from its training data when it "lost the plot" of a very long input. These failures show that today’s LLMs do not treat a 10,000th token with the same fidelity as the 100th token. The longer the prompt, the greater the chance that important details get overlooked or distorted, leading to declining performance, the essence of context rot.

Long context performance results

Long context performance results using a repeated words benchmark by Chroma Research [1]

Why long-context LLMs degrade in performance

Several factors and mechanisms drive context rot in large language models and AI agents:

Lost In the Middle

LLMs do not give equal attention to all tokens in a long sequence. They often exhibit a recency bias, disproportionately focusing on later tokens and losing track of earlier ones. Studies found that key information buried in the middle of a long context is often overlooked, a phenomenon dubbed "lost-in-the-middle," attributed to positional attention biases in transformers. In practice, an LLM might remember the start and end of a document, but critical facts in the midsections rot away from its working memory [2].

Overload and Distractor Confusion

Feeding an LLM a large volume of text introduces many distractors. As pieces of information that are irrelevant or misleading for the task. Models can be easily thrown off by similar-sounding but incorrect content, especially as context grows. For example, given a long context about writing advice containing both the correct answer "from a classmate, write every week" and a trap "from a professor, write every day", models often grabbed the wrong one in longer transcripts. Experiments show that even a single misleading snippet can hurt accuracy, and with four distractors added, performance reduces significantly. Moreover, models tend to latch onto superficially semantic similarities where they might mistakenly choose an answer that "sounds like" the query but isn’t actually correct. These findings imply LLMs rely on pattern-matching more than deep reasoning, leaving them vulnerable to confusion when extra text introduces lookalike content [1].

Shifting Behaviour with Context Length

As context length increases, models may change their decision-making patterns, leading to inconsistent behaviour. Researchers noted some models become overly cautious or refuse to answer when overloaded, while others become confidently wrong, hallucinating details that aren’t in the input. For instance, GPT models often tended to bull ahead and give answers even when unsure, whereas Anthropic’s Claude might just fall silent or give up when overwhelmed. This inconsistency ("alignment drift") is troubling as the same AI that’s helpful on a short prompt might turn erratic or obstinate on a long one.

Outdated or Noisy Reference Content

Another angle to context rot is the quality and freshness of the context provided. If an AI agent is given outdated information or extraneous chunks of text as part of its context, its responses can degrade in accuracy. For instance, an LLM answering a medical question with only last decade’s research papers in context might overlook the latest treatment guidelines, leading to an incorrect or obsolete recommendation. LLMs also readily incorporate errors present in their context where noisy inputs yield noisy outputs. The model has no built-in mechanism to know which part of a long prompt is factually correct or relevant; it could as easily latch onto a wrong detail as the right one if both are provided. This is why grounding an AI in trusted, up-to-date references is critical, otherwise the context itself may mislead the model, compounding the rot in reliability.

Lost in the Middle benchmark result


Lost in the Middle benchmark result showing poor performance on retriving information in the middle of a context window [2]

Impact on High-Stakes Domains (Finance, Medicine, Research)

The consequences of context rot are particularly concerning in knowledge-intensive and high-stakes domains. In areas like finance, healthcare, and scientific research, accuracy and consistency are paramount where a subtle drop in an AI’s reliability can translate to large real-world risks. Unfortunately, these are the very domains that often involve long, complex documents and constantly evolving information, making them susceptible to context rot problems. Below we examine how context rot can undermine AI performance in these fields:

Financial Analysis

In finance, professionals rely on AI to parse lengthy reports, filings, and news feeds. Context rot means an AI might do well on a short summary but miss critical facts in a voluminous annual report. For example, an AI assistant may correctly flag a risk factor in a 5-page executive summary, but when given the full 300-page 10-K report, it glosses over the same detail buried deep inside. This could lead to wrong investment advice or compliance oversight. An AI tasked with scanning market news might handle a one-page article fine, yet falter when digesting a day’s worth of wire reports, mixing up companies or failing to link cause and effect across the long timeline. A context rot slip-up in financial analysis could mean millions lost on a bad trade or an unflagged regulatory issue. Consistency across document lengths is therefore crucial; otherwise, longer reports could yield worse AI insights than shorter ones, which defeats their purpose.

Medical Diagnostics and Literature Review

Medicine increasingly uses AI for decision support and research synthesis, but context rot can literally become a life-or-death issue here. A medical literature assistant might summarise one paper correctly, but get confused when comparing multiple studies on a treatment, potentially merging results or citing the wrong study conclusions. If an AI provides a confident but wrong recommendation due to context rot (for instance, citing outdated research from its context instead of newer findings), doctors or researchers might be led astray. There’s also the risk of silent failures: the AI’s output may look plausible and authoritative, so a clinician trusts it, not realising some key evidence was dropped from consideration in the long context. Ensuring that AIs maintain reliability even as we feed them comprehensive medical records or large bundles of scientific papers is absolutely vital for safe deployment [3].

Academic Research

Researchers often deal with lengthy, detailed documents. Context rot makes AI less dependable in exactly these scenarios. A research assistant AI might review dozens of studies and then confuse two with similar methodologies but different conclusions, giving a flawed recommendation in a grant proposal. As a result, the analyses becomes inconsistent: a scholar asking a question might get a solid answer if the context provided is small and targeted, but a verbose data dump yields a shaky or incorrect answer. This inconsistency erodes trust: users cannot easily predict when the AI will falter in high-stakes research, an AI’s mistake due to context rot (e.g. citing the wrong source or failing to cite an important one) can derail entire projects. There is also a cascading effect where one missed detail in a long context can lead the AI down a wrong path, and each subsequent interaction compounds the error leading to the AI building a flawed conclusion.

In all these domains, context rot undercuts the promise of AI assistance. It reveals a paradox: oftentimes we want to feed the AI as much information as possible where comprehensive data should yield informed answers, yet doing so may actually reduce reliability if the model isn’t equipped to handle it. This has spurred intense interest in techniques to mitigate context rot, especially by making AI systems more aware of and focused on relevant information through retrieval and search capabilities.

Mitigating Context Rot with Search and RAG

To combat context rot, researchers and developers are increasingly turning to Search and Retrieval-Augmented Generation (RAG) that ground LLMs in external knowledge sources. The core idea is simple: instead of dumping a huge raw context into the model (and hoping it can sort the signal from noise), give the model tools to fetch the information it needs on the fly. By integrating search engines, databases, or domain-specific knowledge bases, an AI can work with focused, up-to-date context relevant to the query, thereby reducing the burden on its limited internal memory. In essence, we trade a large, messy input prompt for a smarter system that searches for the right info and only feeds those snippets into the model [4]. This approach offers multiple benefits in reducing context rot:

Staying Up-to-Date

Models with static training data often struggle with outdated knowledge, especially in fast-changing fields. Search-augmented systems can query the latest information (whether it’s today’s financial news or the newest medical research). For example, in the medical domain a recent study noted that RAG "improves the accuracy and relevance of LLM responses by integrating LLMs with a search engine and external sources of knowledge" ensuring answers contain current, factual information instead of stale training data. By always retrieving fresh evidence when a question is asked, the AI is less likely to rot into incorrect answers due to training cutoff or memorised but superseded facts [3].

Focused Context

Intelligent retrieval can shrink the effective context to just the pieces that matter for the task. Rather than feed an entire 100-page document to the model, a RAG system might retrieve the two paragraphs that answer your question. This drastically cuts down the token load and minimises distractors. In one long-conversation test, researchers found that replacing a full 113k-token chat history with a focused 300-token context boosted accuracy by 30% [1]. This shows that high quality relevant snippets beats quantity in context. Modern implementations use vector semantic search or keyword indices to pull only the most relevant chunks of text from a corpus.

By leveraging search or database queries, an AI system is not bound by the fixed context window of the base LLM. The system can have virtually unlimited external memory (all indexed knowledge) and selectively bring pieces of it into each prompt. This sidesteps the model’s internal memory limitations: the AI doesn’t need to hold the entire encyclopedia in its context if it can look up entries as needed. In finance, for instance, instead of pre-loading an LLM with every financial metric of a company (which might cause context overflow), a query can trigger retrieval of just the required data (say last quarter’s revenue from a database). The LLM then operates on that small relevant context. This means the model isn’t wading through irrelevant content thereby mitigating context rot by eliminating much of the "rot-prone" material. It’s like spotlighting only the crucial facts so the model’s attention isn’t diluted.

Grounding and Reduced Hallucinations

Search-augmented models tend to produce answers that are more grounded in verifiable sources, which helps counteract hallucinations and unwarranted confidence. Because the model’s prompt includes evidence from external documents, it is encouraged to base its output on those specifics rather than purely on its parametric knowledge or guesswork. Many RAG systems (like those described below) also return source citations with answers, so users can verify the information. This transparency further discourages the model from making things up. If it can’t find supporting info via search, an aligned system might admit not knowing, rather than hallucinate. Overall, hooking an LLM up to curated knowledge makes it behave more like an open-book exam (where it must quote the book) rather than guessing from memory. This significantly improves factual accuracy in domains where precise details matter.

How Valyu DeepSearch API Helps Mitigate Context Rot

Challenge in long-context LLMsHow Valyu DeepSearch API mitigates itWhy this reduces context rot
Key facts get buried ("lost in the middle").Returns focused, LLM-ready passages (text, tables, figures) with controllable k and structured outputs.Fewer tokens + higher relevance reduce overload and positional/recency bias.
Out-of-date or incomplete sources.Continuously updated coverage across open web and proprietary domains (finance, biomedical, technical).Fresh, authoritative snippets prevent stale facts from dominating prompts.
Irrelevant "distractors" derail reasoning.Reranking and intent-aware retrieval; section targeting (e.g., "Conclusion" for arXiv/PubMed).Cuts near-misses; pulls the needle, not the haystack.
Hallucinations and unverifiable claims.Grounded retrieval with source attribution and links.Cited evidence anchors generations and enables easy verification.
Context window limits → truncation or high token cost.Precision slices instead of whole documents; tool-call-friendly outputs for fetch-compose loops.Shorter prompts reduce degradation and cost.
Numeric evidence hides in prose.Multimodal retrieval returns tables, figures, and images directly.Models reason over the right artifacts without wading through long text.

Context rot mitigation matrix for LLMs

Valyu DeepSearch API

Valyu DeepSearch API returning only the risk factors section from tesla’s most recent SEC filing when queried with “Tesla latest sec filings risk factors”

Example use of DeepSearch API in your agent

  • Finance analyst copilot: For "Summarise Q2 revenue drivers for $XYZ," issue a query constrained to 10-Ks/earnings call transcripts, retrieve top 3–5 passages (incl. tables), then compose with citations. This avoids loading 300+ pages and cuts distractors.
1from valyu import Valyu
2
3valyu = Valyu(api_key="your-valyu-api-key")
4
5response = valyu.search(
6 "Summarise Q2 revenue drivers for $XYZ,"
7)


  • Clinical literature agent: For "first-line therapy in condition X" run intent-aware retrieval on guidelines + PubMed, pull the Recommendations or Conclusion sections, and answer with inline sources.
1from valyu import Valyu
2
3valyu = Valyu(api_key="your-valyu-api-key")
4
5response = valyu.search(
6 "first-line therapy in condition X",
7)

For Teams Trying to Build Reliable Agents

More context isn’t the same as more intelligence. As inputs grow, today’s models suffer context rot: they overlook mid-document facts, get distracted by look-alikes, and regress to confident but brittle answers. The risk is highest exactly where we rely on AI most: finance, medicine, and research because documents are long, facts change fast, and mistakes are costly.

The fix is architectural, not just prompt-level. Treat search and retrieval as first-class capabilities so the model works with focused, fresh, and verifiable evidence instead of bloated prompts. Retrieval-augmented generation (RAG), high-precision re-ranking, section-level pulls, and grounding with citations consistently reduce overload, cut hallucinations, and maintain consistent outputs across document lengths. In practice, that means swapping "dump the whole report into the window" for "fetch the 3–5 spans that actually answer the question".

This approach introduces trade-offs: latency budgets, index quality, retrieval pipelines but they’re manageable with good engineering.

For teams building knowledge-work assistants, the playbook is clear:

  • Constrain the context. Retrieve narrowly, summarize aggressively, and keep prompts short.
  • Ground every claim. Always surface sources; make verification one click away.
  • Prefer sections over PDFs. Pull conclusions, tables, and figures directly.
  • Iterate retrieval, not prompt size. Re-query when uncertain; don’t stuff more tokens.
  • Measure in the wild. Track accuracy vs. context length in your poduction systems.

Tools matter too. Search APIs built for agents (e.g., Valyu DeepSearch) help simplify this pattern by returning LLM-ready, section-level evidence with attribution, so you can compose answers that are both tight and trustworthy.

The bottom line: robust AI for knowledge work doesn’t come from ever-larger context windows; it comes from smarter context. Architect your systems to find the right information, create focused inputs from it, and prove where it came from. Do that, and you’ll not only curb context rot, you’ll ship agents and assistants that your customers can trust.

References

[1]: https://research.trychroma.com/context-rot

[2]: https://arxiv.org/abs/2307.03172

[3]: https://www.nature.com/articles/s41746-025-01651-w

[4]: https://arxiv.org/abs/2005.11401

[5]: https://www.valyu.network/

Cite this Article

1@blog{alex2025context,
2 title = {Reduce your AI Agent’s context rot with Search APIs and RAG},
3 author = {Alexander Ng},
4 year = {2025},
5 month = {August},
6 institution = {Valyu},
7 url = {https://www.valyu.network/blogs/reduce-your-ai-agents-context-rot-with-search-apis-and-rag},
8}